Project Board
Backlog70
Execution of a pipeline following other pipeline
bionode/bionode-watermill#82 opened bytiagofilipe12
discussion
Improve validators over input/output files
bionode/bionode-watermill#80 opened bytiagofilipe12
discussionfeature
"task binding" without hardcoded file suffixes
bionode/bionode-watermill#66 opened bythejmazz
discussion
Personas and Pathways - plan for your project users and their participation![](https://avatars3.githubusercontent.com/u/263386?v=4&s=40)
bionode/bionode#37 opened bybmpvieira
communitymozsprint
Add support for cluster computing
bionode/bionode-watermill#63 opened bytiagofilipe12
enhancementfeature
Added .travis.yml node.js environment. Fixes #2.![](https://avatars3.githubusercontent.com/u/1201571?v=4&s=40)
bionode/events#3 opened byStuntsPT
enhancementmozsprint
Added .travis.yml node.js environment. Fixes #2.![](https://avatars3.githubusercontent.com/u/1201571?v=4&s=40)
bionode/bionode-quickgo#3 opened byStuntsPT
enhancementmozsprint
Add a .travis.yml file with Node environment![](https://avatars3.githubusercontent.com/u/1201571?v=4&s=40)
bionode/bionode-scripts#2 opened bybmpvieira
mozsprinttest
Add a .travis.yml file with Node environment![](https://avatars3.githubusercontent.com/u/1201571?v=4&s=40)
bionode/bionode-quickgo#2 opened bybmpvieira
mozsprinttest
Common Workflow Language (CWL) support?
bionode/bionode-watermill#45 opened byolgabot
CWLdiscussionmozsprint
flag to allow input resolution to fallback to cwd
bionode/bionode-watermill#44 opened bythejmazz
enhancement
json schema validator on input, output, action stream
bionode/bionode-watermill#39 opened bythejmazz
enhancementvalidators
stream search results, filter down to IDs, run pipeline on each ID
bionode/bionode-watermill#17 opened bythejmazz
examples
Remove zlib dependency, replace with core Node api
bionode/bionode-fasta#6 opened bythejmazz
enhancement
[Typdef] cannot have union_of, intersection_of, disjoint_from![](https://avatars1.githubusercontent.com/u/1270998?v=4&s=40)
bionode/bionode-obo#13 opened bythejmazz
enhancement
Change tests engine from chai to tape for compatibility with main bionode module
bionode/bionode-fastq#5 opened bybmpvieira
choremozsprint
Change tests engine from 'assert' to 'tape' for compatibility with main bionode module
bionode/bionode-gff#1 opened bybmpvieira
choremozsprint
Make Docker image and users /home more lightweight
bionode/try-bionode#1 opened bybmpvieira
enhancement
Issues with modules that require binaries (wrappers)
bionode/bionode#29 opened bybmpvieira
discussionhelp wanted
Refactor to be more like other bionode modules
bionode/bionode-bbi#1 opened bybmpvieira
enhancementhelp wanted
Add documentation, and more info to README.md
bionode/bionode-bbi#2 opened bybmpvieira
documentationhelp wanted
Next11
Add insight dependency to anonymously report usage metrics
bionode/bionode-watermill#87 opened bybmpvieira
enhancement
Output some warning to terminal when there is no output
bionode/bionode-ncbi#38 opened bytiagofilipe12
ux
Add insight dependency to anonymously report usage metrics![](https://avatars3.githubusercontent.com/u/263386?v=4&s=40)
bionode/bionode#34 opened bybmpvieira
choremozsprint
In Progress5
Output file matches when defining a task![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill-tutorial#3 opened byODiogoSilva
enhancementquestion
Add considerations on the use of patterns and pipes![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/GSoC17#4 opened bytiagofilipe12
discussion
Done252
Change on the behavior of d3 visualization![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#86 opened bytiagofilipe12
documentationux
Image at the bottom of readme file is broken.![](https://avatars3.githubusercontent.com/u/1201571?v=4&s=40)
bionode/bionode-sam#5 opened byyeban
documentationmozsprint
Merge Develop into Master in preparation for 1.0.0![](https://avatars1.githubusercontent.com/u/1270998?v=4&s=40)
bionode/bionode-watermill#83 opened bythejmazz
enhancement
Add MIT LICENSE file and change it from ISC in package.json![](https://avatars3.githubusercontent.com/u/1201571?v=4&s=40)
bionode/github-project-public#3 opened bybmpvieira
legalmozsprint
Corrected a typo and improved line spacings.![](https://avatars3.githubusercontent.com/u/1201571?v=4&s=40)
bionode/bionode-ncbi#37 opened byStuntsPT
enhancementmozsprint
Add another test for fork within fork wrapped in join![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#73 opened bytiagofilipe12
test
Sanitization and tidy up of Dockerfile![](https://avatars2.githubusercontent.com/u/1532292?v=4&s=40)
bionode/bionode-watermill-tutorial#4 opened byODiogoSilva
enhancement
Orchestrators refactoring and fork handling other orchestrators![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#70 opened bytiagofilipe12
refactor
edits to two-mappers pipeline and removed of redundant defaultTask![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#67 opened bytiagofilipe12
enhancement
implemented redux-logger given an environmental variable![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#61 opened bytiagofilipe12
enhancement
Transfered experimental branch for development of graph![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#59 opened bytiagofilipe12
enhancement
Fixed issue with logging of task name to stdout![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#58 opened bytiagofilipe12
bug
Adds a new example pipeline and edits existing example pipeline![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#53 opened bytiagofilipe12
examples
Tutorial 1 - Input/output declaration![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill-tutorial#2 opened bybfrgoncalves
enhancement
Updated docker related links and added link to tutorial in README![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#56 opened bytiagofilipe12
documentation
Added a tutorial on how to run "two-mappers" example![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-watermill#55 opened bytiagofilipe12
documentation
Mozilla's Global Sprint (June 1st and 2nd 2017)![](https://avatars3.githubusercontent.com/u/263386?v=4&s=40)
bionode/bionode#44 opened bybmpvieira
communitymozsprint
How can be a pipeline extended to deal with multiple samples?![](https://avatars1.githubusercontent.com/u/1270998?v=4&s=40)
bionode/bionode-watermill#47 opened byzhangzhen
mozsprintquestion
make the font-size larger (1.4rem) in the about section![](https://avatars0.githubusercontent.com/u/5578375?v=4&s=40)
bionode/bionode.io#5 opened byIsmailM
enhancement
Download the GFF file of the Cycas taitungensis mitochondrion![](https://avatars3.githubusercontent.com/u/263386?v=4&s=40)
bionode/bionode-ncbi#11 opened bysjackman
enhancement
Prevent progress bar from starting if file already exists![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-ncbi#30 opened bytiagofilipe12
ux
Generate team and contributors for homepage automatically from GitHub.![](https://avatars0.githubusercontent.com/u/5578375?v=4&s=40)
bionode/bionode.io#1 opened bybmpvieira
community
Generate team and contributors for homepage automatically from GitHub...![](https://avatars0.githubusercontent.com/u/5578375?v=4&s=40)
bionode/bionode.io#2 opened byIsmailM
community
Update on docs, removing a useless comment![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-ncbi#28 opened bytiagofilipe12
documentation
Add smaller download assembly for testing and fix #24![](https://avatars1.githubusercontent.com/u/6191251?v=4&s=40)
bionode/bionode-ncbi#27 opened bytiagofilipe12
test
Raise error on failed parsing and ignore empty stream![](https://avatars3.githubusercontent.com/u/263386?v=4&s=40)
bionode/fasta-parser#1 opened bydrpowell
enhancement
Tests are broken because of NCBI side metadata changes (again)![](https://avatars3.githubusercontent.com/u/263386?v=4&s=40)
bionode/bionode-ncbi#18 opened bybmpvieira
bug
Refactor out custom classes into vanilla objs![](https://avatars1.githubusercontent.com/u/1270998?v=4&s=40)
bionode/bionode-watermill#6 opened bythejmazz
enhancement
Collate notes from 4 NGS VC papers into summary+questions![](https://avatars1.githubusercontent.com/u/1270998?v=4&s=40)
bionode/gsoc16#3 opened bythejmazz
discussion
Provide a user-friendly error when unable to access NCBI servers![](https://avatars3.githubusercontent.com/u/6852065?v=4&s=40)
bionode/bionode-ncbi#8 opened bybmpvieira
enhancement
Add a Gitter chat badge to README.md![](https://avatars2.githubusercontent.com/u/8518239?v=4&s=40)
bionode-hack/bionode-example-dat-gasket#1 opened bygitter-badger
invalid
How do we manage to bundle the documentation of all plugins into a Biogems website?![](https://avatars3.githubusercontent.com/u/263386?v=4&s=40)
bionode/bionode#10 opened bywilzbach
enhancement
Collaboration with BioJS (same module system and package manager) ![](https://avatars3.githubusercontent.com/u/263386?v=4&s=40)
bionode/bionode#9 opened bybmpvieira
discussion
switch from dld to nugget, upgrade some dependencies![](https://avatars0.githubusercontent.com/u/39759?v=4&s=40)
bionode/bionode-ncbi#5 opened bymaxogden
enhancement
Decide on output format for interoperability between parsers![](https://avatars1.githubusercontent.com/u/11898?v=4&s=40)
bionode/bionode-fasta#4 opened byalanrice
discussion
can we similarly have a function to find detect non canonical translation sites?![](https://avatars3.githubusercontent.com/u/263386?v=4&s=40)
bionode/bionode#2 opened byyeban
feature